学会発表・論文掲載
Ayumi Takano, Koki Ono, Kyosuke Nozawa, Makito Sato, Masaki Onuki, Jun Sese, Yosuke Yumoto, Sachio Matsushita, Toshihiko Matsumoto
Wearable Sensor and Mobile App–Based mHealth Approach for Investigating Substance Use and Related Factors in Daily Life: Protocol for an Ecological Momentary Assessment Study
JMIR Research Protocols, 12, e44275, DOI:10.2196/44275
佐藤 香奈子, 佐藤 牧人, 澤谷 真葵, 五領田 小百合, 小林 優香, 髙山 美波, 塚越 光
運動教室に継続参加する高齢者はなぜ「元気」なのか？ 山形県庄内地域におけるケーススタディー
2023年3月3〜4日, 超異分野学会 東京大会2023, 九段会館
Moeko Okada, Jianqiang Sun, Toshiaki Tameshige, Masaomi Hatakeyama, Rie Shimizu-Inatsugi, Shigeo Takumi, Jun Sese, Kentaro K. Shimizu
Effects of Allopolyploidization on Homoeologous Gene Expression Changes and Environmental Response in Hexaploid Wheat
2023年1月13〜18日, Plant & Animal Genome Conference: PAG 30, Town & Country Resort and Conference
Masaru Koido, Chung-Chau Hon, Satoshi Koyama, Hideya Kawaji, Yasuhiro Murakawa, Kazuyoshi Ishigaki, Kaoru Ito, Jun Sese, Nicholas F. Parrish, Yoichiro Kamatani, Piero Carninci, Chikashi Terao
Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning
Nature Biomedical Engineering (2022), DOI:10.1038/s41551-022-00961-8
Tomohiro Hosoya, Masamichi Takahashi, Calvin Davey, Jun Sese, Mai Honda-Kitahara, Yasuji Miyakita, Makoto Ohno, Shunsuke Yanagisawa, Takaki Omura, Daisuke Kawauchi, Yukie Ozeki, Miyu Kikuchi, Tomoyuki Nakano, Akihiko Yoshida, Hiroshi Igaki, Yuko Matsushita, Koichi Ichimura, Yoshitaka Narita
Volumetric Analysis of Glioblastoma for Determining Which CpG Sites Should Be Tested by Pyrosequencing to Predict Temozolomide Efficacy
Biomolecules 2022, 12(10), DOI:10.3390/biom12101379
Masaki Onuki, Makito Sato, Jun Sese
Estimating Physical/Mental Health Condition Using Heart Rate Data from a Wearable Device
2022年7月14日, the 44th International Engineering in Medicine and Biology Conference（EMBC2022）, Scottish Event Campus Centre
Yuya Sato, Jun Sese, Takatoshi Matsuyama, Masaki Onuki, Shogo Mase, Keisuke Okuno, Katsumasa Saito, Naoto Fujiwara, Akihiro Hoshino, Kenro Kawada, Masanori Tokunaga, Yusuke Kinugasa
Preliminary study for developing a navigation system for gastric cancer surgery using artificial intelligence
Surgery Today (2022), 2022 May 5, DOI:10.1007/s00595-022-02508-5
高野歩, 大野昴紀, 野沢恭介, 松本俊彦, 松下幸生, 湯本洋介, 小貫真希, 妙圎園香苗, 佐藤牧人, 瀬々 潤
モバイルデバイスを用いたアルコール・薬物使用リアルタイムデータ収集と介入プログラムの開発
2021年12月17日〜19日, 2021年度アルコール・薬物依存関連学会合同学術総会, 三重県総合文化センター
Reiko Akiyama, Takao Goto, Toshiaki Tameshige, Jiro Sugisaka, Rie Shimizu-Inatsugi, Jianqiang Sun, Junichi Akita, Natsumaro Kutsuna, Jun Sese, Kentaro K. Shimizu
Time-course image analysis of Arabidopsis thaliana and its wild relatives in fluctuating field conditions using machine learning
2021年12月8日, Patterns in Nature and Plant Sciences – PSC SYMPOSIUM 2021, Zurich-Basel Plant Science Center
高橋 慧, 高橋 雅道, 木下 学, 三宅 基隆, 小林 和馬, 瀬々 潤, 市村 幸一, 浜本 隆二, グリオーマ分子診断グリオーマ分子診断コンソーシアム
多施設にて適応可能な頑強なMRIを用いた遺伝子診断方法の為の初期検討
2021年10月21日～23日, 第59回日本癌治療学会学術集会, パシフィコ横浜
Stefan Milosavljevic, Tony Kuo, Samuele Decarli, Lucas Mohn, Jun Sese, Kentaro K. Shimizu, Rie Shimizu-Inatsugi, Mark D. Robinson
ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw
BMC Genomics volume 22, 547 (2021), DOI:10.1186/s12864-021-07845-2
Tetsushi Iida, Naoko Iida, Jun Sese, Takehiko Kobayashi
Evaluation of repair activity by quantification of ribonucleotides in the genome.
Genes to cells Volume26, Issue8, August 2021, Pages 555-569, DOI:10.1111/gtc.12871
Kevin Kit Siong Ng, Masaki J Kobayashi, Jeffrey A Fawcett, Masaomi Hatakeyama, Timothy Paape, Chin Hong Ng, Choon Cheng Ang, Lee Hong Tnah, Chai Ting Lee, Tomoaki Nishiyama, Jun Sese, Michael J O’Brien, Dario Copetti, Mohd Noor Mat Isa, Robert Cyril Ong, Mahardika Putra, Iskandar Z Siregar, Sapto Indrioko, Yoshiko Kosugi, Ayako Izuno, Yuji Isagi, Soon Leong Lee, Kentaro K Shimizu
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests
Communications biology 4(1), Article number: 1166 (2021), DOI:10.1038/s42003-021-02682-1
Kevin Kit Siong Ng, Masaki J Kobayashi, Jeffrey A Fawcett, Masaomi Hatakeyama, Timothy Paape, Chin Hong Ng, Choon Cheng Ang, Lee Hong Tnah, Chai Ting Lee, Tomoaki Nishiyama, Jun Sese, Michael J O’Brien, Dario Copetti, Mohd Noor Mat Isa, Robert Cyril Ong, Mahardika Putra, Iskandar Z Siregar, Sapto Indrioko, Yoshiko Kosugi, Ayako Izuno, Yuji Isagi, Soon Leong Lee, Kentaro K Shimizu
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests
Communications biology 4(1), Article number: 1166 (2021), DOI:10.1038/s42003-021-02682-1
Risa K Kawaguchi Masamichi Takahashi, Mototaka Miyake, Manabu Kinoshita, Satoshi Takahashi, Koichi Ichimura, Ryuji Hamamoto, Yoshitaka Narita, Jun Sese
Assessing Versatile Machine Learning Models for Glioma Radiogenomic Studies across Hospitals
Cancers, 2021 Jul 19;13(14):3611, DOI:10.3390/cancers13143611
Jiyeon Park, Keisei Kosaki, Kanae Myoenzono, Youngju Choi, Takehiko Tsujimoto, Nobutake Shimojo, Seiji Maeda
Effects of aerobic exercise training on circulating angiopoietin-like protein 2 in overweight and obese men: a pilot study
Journal of Men’s Health, Vol.17, Issue 4, 30 September 2021, DOI:10.31083/jomh.2021.121
Kevin Kit Siong Ng, Masaki J. Kobayashi, Jeffrey A. Fawcett, Masaomi Hatakeyama, Timothy Paape, Chin Hong Ng, Choon Cheng Ang, Lee Hong Tnah, Chai Ting Lee, Tomoaki Nishiyama, Jun Sese, Michael J. O’Brien, Dario Copetti, Mohd Noor Mat Isa, Robert Cyril Ong, Mahardika Putra, Iskandar Z Siregar, Sapto Indrioko, Yoshiko Kosugi, Ayako Izuno, Yuji Isagi, Soon Leong Lee & Kentaro K. Shimizu
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests
Communications Biology 4, 1166 (2021), DOI:10.1038/s42003-021-02682-1
瀬川 海, 芦谷 道子, 五十棲 計, 瀬々 潤, 小貫 真希, 妙圎園 香苗, Ha David, 大平 雅子
労働者の毛髪中のストレス関連ホルモン量と生活習慣・主観的ストレスとの関連
2021年10月30日〜31日, 第37回日本ストレス学会学術総会, オンライン開催
Satoshi Takahashi, Masamichi Takahashi, Manabu Kinoshita, Mototaka Miyake, Risa Kawaguchi, Naoki Shinojima, Akitake Mukasa, Kuniaki Saito, Motoo Nagane, Ryohei Otani, Fumi Higuchi, Shota Tanaka, Nobuhiro Hata, Kaoru Tamura, Kensuke Tateishi, Ryo Nishikawa, Hideyuki Arita, Masahiro Nonaka, Takehiro Uda, Junya Fukai, Yoshiko Okita, Naohiro Tsuyuguchi, Yonehiro Kanemura, Kazuma Kobayashi, Jun Sese, Koichi Ichimura, Yoshitaka Narita, Ryuji Hamamoto
Fine-Tuning Approach for Segmentation of Gliomas in Brain Magnetic Resonance Images with a Machine Learning Method to Normalize Image Differences among Facilities
Cancers 2021, 13(6), 1415, DOI:10.3390/cancers13061415
Rio Ikuta, Kanae Myoenzono, Jun Wasano, Kayoko Hamaguchi-Hamada, Shun Hamada, Mami Kurumata-Shigeto
N-cadherin localization in taste buds of mouse circumvallate papillae
J Comp Neurol, 2020 Dec 14, DOI:10.1002/cne.25090
Ryuji Hamamoto, Kruthi Suvarna, Masayoshi Yamada, Kazuma Kobayashi, Norio Shinkai, Mototaka Miyake, Masamichi Takahashi, Shunichi Jinnai, Ryo Shimoyama, Akira Sakai, Ken Takasawa, Amina Bolatkan, Kanto Shozu, Ai Dozen, Hidenori Machino, Satoshi Takahashi, Ken Asada, Masaaki Komatsu, Jun Sese, Syuzo Kaneko
Application of Artificial Intelligence Technology in Oncology: Towards the Establishment of Precision Medicine
Cancers 2020, 12(12), 3532; DOI:10.3390/cancers12123532
Reiko Akiyama, Jianqiang Sun, Masaomi Hatakeyama, Heidi E.L. Lischer, Roman V. Briskine, Angela Hay, Xiangchao Gan, Miltos Tsiantis, Hiroshi Kudoh, Masahiro M. Kanaoka, Jun Sese, Kentaro K. Shimizu, Rie Shimizu-Inatsugi
Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species
New Phytologist, 22 November 2020, NPH17101, DOI:10.1111/nph.17101
Kentaro K. Shimizu, Dario Copetti, Moeko Okada, Thomas Wicker, Toshiaki Tameshige, Masaomi Hatakeyama, Rie Shimizu-Inatsugi, Catharine Aquino, Kazusa Nishimura, Fuminori Kobayashi, Kazuki Murata, Tony Kuo, Emily Delorean, Jesse Poland, Georg Haberer, Manuel Spannagl, Klaus F. X. Mayer, Juan Gutierrez-Gonzalez, Gary J. Muehlbauer, Cecile Monat, Axel Himmelbach, Sudharsan Padmarasu, Martin Mascher, Sean Walkowiak, Tetsuya Nakazaki, Tomohiro Ban, Kanako Kawaura1 Hiroyuki Tsuji, Curtis Pozniak, Nils Stein, Jun Sese, Shuhei Nasuda, Hirokazu Handa
De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium Resistance Genes in East Asian Genotypes
Plant and Cell Physiology (2020), DOI:10.1093/pcp/pcaa152
Sean Walkowiak, Liangliang Gao, Cecile Monat, Georg Haberer, Mulualem T. Kassa, Jemima Brinton, Ricardo H. Ramirez-Gonzalez, Markus C. Kolodziej, Emily Delorean, Dinushika Thambugala, Valentyna Klymiuk, Brook Byrns, Heidrun Gundlach, Venkat Bandi, Jorge Nunez Siri, Kirby Nilsen, Catharine Aquino, Axel Himmelbach, Dario Copetti, Tomohiro Ban, Luca Venturini, Michael Bevan, Bernardo Clavijo, Dal-Hoe Koo, Jennifer Ens, Krystalee Wiebe, Amidou N’Daiye, Allen K. Fritz, Carl Gutwin, Anne Fiebig, Christine Fosker, Bin Xiao Fu, Gonzalo Garcia Accinelli, Keith A Gardner, Nick Fradgley, Juan Gutierrez-Gonzalez, Gwyneth Halstead-Nussloch, Masaomi Hatakeyama, Chu Shin Koh, Jasline Deek, Alejandro C. Costamagna, Pierre Fobert, Darren Heavens, Hiroyuki Kanamori, Kanako Kawaura, Fuminori Kobayashi, Ksenia Krasileva, Tony Kuo, Neil McKenzie, Kazuki Murata, Yusuke Nabeka, Timothy Paape, Sudharsan Padmarasu, Lawrence Percival-Alwyn, Sateesh Kagale, Uwe Scholz, Jun Sese, Philomin Juliana, Ravi Singh, Rie Shimizu-Inatsugi, David Swarbreck, James Cockram, Hikmet Budak, Toshiaki Tameshige, Tsuyoshi Tanaka, Hiroyuki Tsuji, Jonathan Wright, Jianzhong Wu, Burkhard Steuernagel, Ian Small, Sylvie Cloutier, Gabriel Keeble-Gagnere, Gary Muehlbauer, Josquin Tibbets, Shuhei Nasuda, Joanna Melonek, Pierre J. Hucl, Andrew Sharpe, Matthew Clark, Erik Legg, Arvind Bharti, Peter Langridge, Anthony Hall, Cristobal Uauy, Martin Mascher, Simon G. Krattinger, Hirokazu Handa, Kentaro K. Shimizu, Assaf Distelfeld, Ken Chalmers, Beat Keller, Klaus F. X. Mayer, Jesse Poland, Nils Stein, Curt A. McCartney, Manuel Spannagl, Thomas Wicker, and Curtis J. Pozniak
Multiple wheat genomes reveal global variation in modern breeding
Nature (2020), DOI:10.1038/s41586-020-2961-x
Satoshi Takahashi, Ken Asada, Ken Takasawa, Ryo Shimoyama, Akira Sakai, Amina Bolatkan, Norio Shinkai, Kazuma Kobayashi, Masaaki Komatsu, Syuzo Kaneko, Jun Sese, Ryuji Hamamoto
Predicting Deep Learning Based Multi-Omics Parallel Integration Survival Subtypes in Lung Cancer Using Reverse Phase Protein Array Data
Biomolecules 2020, 10(10), 1460, DOI:10.3390/biom10101460
Jianqiang Sun, Rie Shimizu-Inatsugi, Hugo Hofhuis, Kentaro Shimizu, Angela Hay, Kentaro K. Shimizu and Jun Sese
A recently formed triploid Cardamine insueta inherits leaf vivipary and submergence tolerance traits of parents
Frontiers in Genetics, October 2020, Volume11, 567262, DOI:10.3389/fgene.2020.567262
Ken Asada, Kazuma Kobayashi, Samuel Joutard, Masashi Tubaki, Satoshi Takahashi, Ken Takasawa, Masaaki Komatsu, Syuzo Kaneko, Jun Sese, Ryuji Hamamoto
Uncovering Prognosis-Related Genes and Pathways by Multi-Omics Analysis in Lung Cancer
Biomolecules 2020, 10(4), 524, DOI:10.3390/biom10040524
Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes
Scientific Reports 10, 37 (2020), DOI:10.1038/s41598-019-56881-2
Aika Terada
Interpretable prediction of cancer types with LAMP and two-phase method
2019年12月25-26日, 情報系 WINTER FESTA Episode 5, 一橋講堂＠東京都
Hongdi Wang, Azusa Sawai, Noriyuki Toji, Rintaro Sugioka, Yukino Shibata, Yuika Suzuki, Yu Ji, Shin Hayase, Satoru Akama, Jun Sese, Kazuhiro Wada
Transcriptional regulatory divergence underpinning species-specific learned vocalization in songbirds
PLoS Biology, 2019 Nov 13;17(11):e3000476, DOI: 10.1371/journal.pbio.3000476
Ayami Matsushima, Jun Sese, Kanako O. Koyanagi
Biosynthetic Short Neuropeptides: A Rational Theory Based on Experimental Results for the Missing Pain‐Relief Opioid Endomorphin Precursor Gene
ChemBioChem, Volume20, Issue16 Special Issue:10th IPS, 2019, 2054-2058, https://doi.org/10.1002/cbic.201900317
Risa Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction
BMC Bioinformatics 2019, 20(Suppl 3):130 https://doi.org/10.1186/s12859-019-2645-4
Tony C Y Kuo, Masaomi Hatakeyama, Toshiaki Tameshige, Kentaro K Shimizu, Jun Sese
Homeolog expression quantification methods for allopolyploids
Briefings in Bioinformatics, Volume 21, Issue 2, March 2020, Pages 395–407 https://doi.org/10.1093/bib/bby121
Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda,Hideya Kawaji, Ryo Nakaki, Jun Sese, and Chikara Meno
ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data.
EMBO Reports, 2018, e46255.（doi: 10.15252/embr.201846255）
採択・競争的資金獲得履歴
- 中小企業庁：令和元年度補正・令和3年度補正 ものづくり・商業・サービス生産性向上促進補助金
- 農林水産省：月面等における長期滞在を支える高度資源循環型食料供給システムの開発
- JST/AIP加速課題：信頼できるデータ駆動科学のための統計学の深化
- 中小企業庁：令和元年度補正・令和2年度補正 ものづくり・商業・サービス生産性向上促進補助金
- 日本財団 / プロジェクト・イッカク：自律分散ごみ処理システムの開発
- AMED：次世代治療・診断実現のための創薬基盤技術開発事業（患者層別化マーカー探索技術の開発）/ 潜在疾患マーカー同定による新規創薬基盤技術のフィージビリティ研究
- 経済産業省：平成30年度健康寿命延伸産業創出推進事業（産学連携・データ駆動型のイノベーション創出基盤構築事業）
- JST / CREST：機械学習を用いた倍数体オミクス解析とモデリング技術の開発
- JST / CREST：統計的検定手法構築、高速化、大規模化及び手法の普及
各種指定・認定
メディア掲載
瀬々 潤
コムギのゲノム国際チーム解読
日本経済新聞朝刊 26面（2020年12月6日発売）
瀬々 潤
世界のパンコムギ15品種 高精度ゲノム解読
週刊 科学新聞 第3804号4面（2020年12月4日発売）
瀬々 潤
コムギ15種ゲノム解読 横浜市大など参加 10カ国共同研究
日刊工業新聞 24面（2020年11月26日発売）
小貫 真希、瀬々 潤
ディープラーニングの基礎知識─押さえておくべき用語と手法
インナービジョン社 「iv-MOOK vol.1 学ぶ！ 究める！ 医療AI ディープラーニングの基礎から研究最前線まで」 （2020年4月21日発売）
瀬々 潤
第2回日本メディカルAI学会学術集会が開催 – メディカルAIの社会実装に向けた議論が進む
インナービジョン社 「月刊インナービジョン」 2020年3月号 Vol.35 No.3（2020年2月25日発売） および innavi net（2020年2月12日付）
瀬々 潤、井上 浄
“個体”のデータを徹底追求しよう！そこから未来が見えてくる――「人」の解明目指すヒューマノーム研究所（前編）
民間の研究所の力で、日本を再び科学技術立国に――ヒューマノーム研究所が抱く野望（後編）
日経DIGITALIST / Innovators（2019年3月26日〜3月27日付）
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